Changeset 21795 in main


Ignore:
Timestamp:
10/15/20 17:35:26 (10 days ago)
Author:
TongZheng_UT
Message:

set up covid19 module

Location:
adopters/ut/trunk/src/main/webapps/ibisph-content/xml/query/module/covid
Files:
2 added
3 edited

Legend:

Unmodified
Added
Removed
  • adopters/ut/trunk/src/main/webapps/ibisph-content/xml/query/module/covid/COVID19.xml

    r21772 r21795  
    178178        <ibis:include href="dimension/GeoSarea.xml"/>
    179179        <ibis:include href="dimension/GeoLegisDist.xml"/>
     180        <ibis:include href="dimension/GeoHouseDist.xml"/>
     181        <ibis:include href="dimension/GeoSenateDist.xml"/>
    180182    <!--ibis:include href="dimension/GeoZIP.xml"/-->
    181183    <ibis:include href="dimension/spvar1.xml"/>
  • adopters/ut/trunk/src/main/webapps/ibisph-content/xml/query/module/covid/COVID19_Lab.xml

    r21765 r21795  
    4949    <PARAMETER>
    5050      <NAME>config</NAME>
    51       <VALUE>/srv/ibis-q/modules/covid/covid.cfg</VALUE>
     51      <VALUE>/srv/ibis-q/modules/covid/covid_test.cfg</VALUE>
    5252    </PARAMETER>
    5353    <PARAMETER>
     
    7575      <MEASURES>
    7676        <MEASURE>
    77           <NAME>Count</NAME>
    78           <TITLE>Case Count</TITLE>
    79           <DESCRIPTION>Number of COVID-19 cases</DESCRIPTION>
     77          <NAME>Rate</NAME>
     78          <TITLE>Positive Rates</TITLE>
     79          <DESCRIPTION>Mortality Crude Rates</DESCRIPTION>
     80          <NUMERATOR>
     81            <TITLE>Number of Positive</TITLE>
     82            <XSLT_FORMAT_PATTERN>,##0</XSLT_FORMAT_PATTERN>
     83          </NUMERATOR>
     84          <DENOMINATOR>
     85            <TITLE>Number Tested</TITLE>
     86            <DESCRIPTION>Numbert tested</DESCRIPTION>
     87            <XSLT_FORMAT_PATTERN>,##0</XSLT_FORMAT_PATTERN>
     88          </DENOMINATOR>
     89          <LOWER_CONFIDENCE_LIMIT>
     90            <TITLE>95% CI LL</TITLE>
     91            <DESCRIPTION>95% Confidence Interval Lower Limit</DESCRIPTION>
     92          </LOWER_CONFIDENCE_LIMIT>
     93          <UPPER_CONFIDENCE_LIMIT>
     94            <TITLE>95%CI UL</TITLE>
     95            <DESCRIPTION>95% Confidence Interval Upper Limit</DESCRIPTION>
     96          </UPPER_CONFIDENCE_LIMIT>
     97        </MEASURE>
     98        <MEASURE>
     99          <NAME>CV</NAME>
     100          <TITLE>Relative Standard Error (Coefficient of Variation %)</TITLE>
     101          <DESCRIPTION>Relative Standard Error (Coefficient of Variation %)</DESCRIPTION>
    80102        </MEASURE>
    81103      </MEASURES>
    82104      <NAME>Percent</NAME>
    83       <TITLE>Percent Positivity</TITLE>
    84       <DESCRIPTION>Percent Positivity</DESCRIPTION>
     105      <TITLE>Positive Percenate</TITLE>
     106      <DESCRIPTION>Positive Percentage</DESCRIPTION>
     107      <!--ADD_MISSING_QUERY_RESULT_RECORDS>
     108        <ALL_FLAG/>
     109        <DIMENSION_NAMES>
     110                                        <DIMENSION_NAME>some dim name</DIMENSION_NAME>
     111                                        <DIMENSION_NAME>some dim proxy name</DIMENSION_NAME>
     112                                        <DIMENSION_NAME>some dim name</DIMENSION_NAME>
     113                                </DIMENSION_NAMES>
     114      </ADD_MISSING_QUERY_RESULT_RECORDS-->
    85115      <PARAMETERS>
    86116        <PARAMETER>
    87117          <NAME>func</NAME>
    88           <VALUE>data_frame/CrudeRateHospEPHT.def</VALUE>
     118          <VALUE>data_frame/CrudeRate_cv.def</VALUE>
    89119        </PARAMETER>
    90         <!--PARAMETER>
    91           <NAME>data_where</NAME>
    92           <VALUE></VALUE>
    93         </PARAMETER-->
    94120      </PARAMETERS>
    95121      <CRITERIA>
     
    97123          <MAP_NAMES>
    98124            <MAP_NAME>LHD_1COLOR_NO_OPTIONS</MAP_NAME>
     125            <MAP_NAME>HighLowSame_2015</MAP_NAME>
    99126            <MAP_NAME>SA_1COLOR_NO_OPTIONS</MAP_NAME>
    100             <MAP_NAME>CNTY_1COLOR_NO_OPTIONS</MAP_NAME>
    101             <MAP_NAME>LHD_3GRPS_QUANT</MAP_NAME>
     127            <MAP_NAME>1COLOR_NO_OPTIONS_2015</MAP_NAME>
     128            <!--MAP_NAME>3GRPS_QUANT</MAP_NAME-->
    102129            <MAP_NAME>DEFAULT</MAP_NAME>
    103130            <MAP_NAME>ALL</MAP_NAME>
     131            <MAP_NAME>GeoADI</MAP_NAME>
     132            <MAP_NAME>GeoCBSA</MAP_NAME>
     133            <MAP_NAME>GeoWFZone</MAP_NAME>
    104134          </MAP_NAMES>
    105135          <!--SECTION_NAMES>
    106             <SECTION_NAME>Demo</SECTION_NAME>
    107             <SECTION_NAME>Risk</SECTION_NAME>
    108                         <SECTION_NAME>YearWeek</SECTION_NAME>
    109                         <SECTION_NAME>Hospital</SECTION_NAME>
    110             <SECTION_NAME>COVIDDeath</SECTION_NAME>
    111                         <SECTION_NAME>Geo</SECTION_NAME>
    112           </SECTION_NAMES>
     136            <SECTION_NAME>Top10</SECTION_NAME>
     137            <SECTION_NAME>GeoRes</SECTION_NAME>
     138            <SECTION_NAME>RaceAlone</SECTION_NAME>
     139          </SECTION_NAMES-->
    113140          <DIMENSION_NAMES>
    114             <DIMENSION_NAME>AgeGrpProxy</DIMENSION_NAME>
    115                         <DIMENSION_NAME>Year</DIMENSION_NAME>
    116                         <DIMENSION_NAME>Week</DIMENSION_NAME>
    117             <DIMENSION_NAME>Sex</DIMENSION_NAME>
    118                         <DIMENSION_NAME>GeoProxy</DIMENSION_NAME>
    119                         <DIMENSION_NAME>White</DIMENSION_NAME>
    120                         <DIMENSION_NAME>Black</DIMENSION_NAME>
    121                         <DIMENSION_NAME>Asian</DIMENSION_NAME>
    122                         <DIMENSION_NAME>AIAN</DIMENSION_NAME>
    123                         <DIMENSION_NAME>NHPI</DIMENSION_NAME>
    124                         <DIMENSION_NAME>Other</DIMENSION_NAME>
    125                         <DIMENSION_NAME>Unknown</DIMENSION_NAME>
    126                         <DIMENSION_NAME>Hisp</DIMENSION_NAME>
    127                         <DIMENSION_NAME>Hosp</DIMENSION_NAME>
    128                         <DIMENSION_NAME>ICU</DIMENSION_NAME>
    129                         <DIMENSION_NAME>Any</DIMENSION_NAME>
    130                         <DIMENSION_NAME>Cardiac</DIMENSION_NAME>
    131                         <DIMENSION_NAME>Diab</DIMENSION_NAME>
    132                         <DIMENSION_NAME>Hype</DIMENSION_NAME>
    133                         <DIMENSION_NAME>Immu</DIMENSION_NAME>
    134                         <DIMENSION_NAME>Kidney</DIMENSION_NAME>
    135                         <DIMENSION_NAME>Liver</DIMENSION_NAME>
    136                         <DIMENSION_NAME>CurrentSmoker</DIMENSION_NAME>
    137                         <DIMENSION_NAME>FormerSmoker</DIMENSION_NAME>
    138                         <DIMENSION_NAME>OtherComorb</DIMENSION_NAME>
    139                         <DIMENSION_NAME>Psych</DIMENSION_NAME>
    140                         <DIMENSION_NAME>Abuse</DIMENSION_NAME>
    141                         <DIMENSION_NAME>Autoi</DIMENSION_NAME>
    142                         <DIMENSION_NAME>Disability</DIMENSION_NAME>
    143                         <DIMENSION_NAME>Obesity</DIMENSION_NAME>
    144                         <DIMENSION_NAME>COVIDDeath</DIMENSION_NAME>
    145                         <DIMENSION_NAME>CPD</DIMENSION_NAME>
    146                
    147           </DIMENSION_NAMES-->
     141            <DIMENSION_NAME>ICDNCHS50Top10</DIMENSION_NAME>
     142            <DIMENSION_NAME>RaceAlone</DIMENSION_NAME>
     143          </DIMENSION_NAMES>
    148144        </EXCLUDE>
    149145      </CRITERIA>
    150146      <DATA_SOURCES>
    151         <ibis:include href="data_source/COVID.xml"/>
     147        <!--ibis:include href="data_source/Death.xml"/>
     148                                <ibis:include href="data_source/GOPB.xml"/-->
     149        <ibis:include href="data_source/NVSS.xml"/>
    152150      </DATA_SOURCES>
    153151      <DATA_NOTES>
    154         <ibis:include href="data_note/COVID.xml"/>
     152        <ibis:include href="data_note/ICD.xml"/>
     153        <ibis:include href="data_note/GeoLHD_2015.xml"/>
    155154      </DATA_NOTES>
    156       <!--DATA_ISSUES>
    157         <ibis:include href="data_issue/COVID.xml"/>
    158       </DATA_ISSUES-->
     155      <DATA_ISSUES>
     156        <!--ibis:include href="data_issue/Mort.xml"/-->
     157      </DATA_ISSUES>
    159158    </CONFIGURATION>
     159       
    160160  </CONFIGURATIONS>
    161161  <CRITERIA>
     
    169169      <ibis:include href="section/LabCollectionDate_2.xml"/>
    170170      <ibis:include href="section/YearWeek_LabCollection.xml"/>
     171          <ibis:include href="section/Demo.xml"/>
    171172      <ibis:include href="section/TestType.xml"/>
    172173           <ibis:include href="section/TestResult.xml"/>
     
    180181        <ibis:include href="dimension/TestType.xml"/>
    181182        <ibis:include href="dimension/TestResult.xml"/>
    182     <!--ibis:include href="dimension/AgeGrpProxy.xml"/>
     183    <ibis:include href="dimension/AgeGrpProxy.xml"/>
    183184    <ibis:include href="dimension/AgeCovid.xml"/>
    184185    <ibis:include href="dimension/AgeGrp9.xml"/>
     
    192193        <ibis:include href="dimension/Unknown.xml"/>
    193194    <ibis:include href="dimension/Hisp.xml"/>
    194         <ibis:include href="dimension/Hosp.xml"/>
     195        <!--ibis:include href="dimension/Hosp.xml"/>
    195196        <ibis:include href="dimension/ICU.xml"/>
    196197
     
    217218        <ibis:include href="dimension/GeoUrban.xml"/>
    218219        <ibis:include href="dimension/GeoSarea.xml"/>
    219         <ibis:include href="dimension/GeoSchDist.xml"/>
     220        <ibis:include href="dimension/GeoLegisDist.xml"/>
     221        <ibis:include href="dimension/GeoHouseDist.xml"/>
     222        <ibis:include href="dimension/GeoSenateDist.xml"/>
    220223    <!--ibis:include href="dimension/GeoZIP.xml"/-->
    221224    <ibis:include href="dimension/spvar1.xml"/>
  • adopters/ut/trunk/src/main/webapps/ibisph-content/xml/query/module/covid/section/Geo.xml

    r21772 r21795  
    8080      </SELECTIONS>
    8181    </SELECTION>
     82       
     83        <SELECTION>
     84      <TITLE>House Districts</TITLE>
     85      <VALUE>GeoHouseDist</VALUE>
     86      <SELECTIONS>
     87        <SELECTION>
     88          <TITLE>All house districs</TITLE>
     89        </SELECTION>
     90        <DIMENSION_NAME>GeoHouseDist</DIMENSION_NAME>
     91        <SELECTION_TYPE>
     92          <LIST>
     93            <SIZE>6</SIZE>
     94            <MULTIPLE/>
     95          </LIST>
     96        </SELECTION_TYPE>
     97      </SELECTIONS>
     98    </SELECTION>
     99        <SELECTION>
     100      <TITLE>Senate districts</TITLE>
     101      <VALUE>GeoSenateDist</VALUE>
     102      <SELECTIONS>
     103        <SELECTION>
     104          <TITLE>All senate districts</TITLE>
     105        </SELECTION>
     106        <DIMENSION_NAME>GeoSenateDist</DIMENSION_NAME>
     107        <SELECTION_TYPE>
     108          <LIST>
     109            <SIZE>6</SIZE>
     110            <MULTIPLE/>
     111          </LIST>
     112        </SELECTION_TYPE>
     113      </SELECTIONS>
     114    </SELECTION>
    82115        <!--SELECTION>
    83116      <TITLE>Legislative districts </TITLE>
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